Silent Sky is a combination of the additional episodes 13 and 14. It consists of the story in the future, three months after the incident that was similar to "New Generation Madness" and the disease Chaos Child Syndrome that brought by the past earthquake in Shibuya.

In a future governed through the lens of a camera, where people eat synthetic food and pursue an online existence in lieu of physical contact, a group of children begin meeting up in the real world. The aloof Ayumi Kono, the genius hacker Mio Tsuzuki, and the socially awkward Hazuki Makino set out to find the fourth member of their group, Yuko Yabe, who has gone missing. With the help of Myao Rei, an unregistered citizen proficient in martial arts, they are able to find Yuko. However, when their situation takes a sudden turn for the worse, the group stumbles headlong into a dark mystery that challenges everything they know about their world.

Armed Detective Agency members discuss the most suitable candidate for the second-in-command. Doppo Kunikida is carrying out official errands as planned in his diary as usual. Unexpectedly, a bomb-related incident occurs, challenging the ideals he has always upheld. When weighing one life over hundreds, how will he proceed?

There is a powerful spirit doctor, renown in the world of yaoguai (sentient spirits/demons/animals/forces of nature), who wears a silent bell, though few know what she looks like. She travels the world helping yaoguai who are suffering from various spiritual ailments, sometimes helping humans along the way. She is accompanied by a young monk and a serpent demon in the form of a man. We look into the stories of various yaoguai and the sources of their suffering.